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ABSTRACT Exosortases are involved in trafficking proteins containing PEP-CTERM domains to the exterior of gram-negative bacterial cells. The role of these proteins in cyanobacteria, where such homologs are common, has not been defined. The filamentous cyanobacteriumNostoc punctiformecontains a single putative exosortase, designated cyanoexosortase B (CrtB), implicated by previous work both in motility and in the production of the UV-absorbing pigment, scytonemin. To determine the role ofcrtBinN. punctiforme, acrtB-deletion strain (ΔcrtB) was generated. ΔcrtBpresented the loss of motility, biofilm formation, and scytonemin production. In the case of motility, the ΔcrtBmutant exhibited a specific defect in the ability of hormogonia (specialized motile filaments) to adhere to hormogonium polysaccharide (HPS), and several PEP-CTERM proteins expressed in motile hormogonia were differentially abundant in the exoproteome of the wild-type compared with the ΔcrtBstrain. These results are consistent with the hypothetical role of CrtB in the processing and export of PEP-CTERM proteins that play a critical role in stabilizing the interaction between the filament surface and HPS to facilitate motility and biofilm formation. In the case of scytonemin—the late biosynthetic steps of which occur in the periplasm and whose operon contains several putative PEP-CTERM proteins—ΔcrtBfailed to produce it. Given the abundance of putative PEP-CTERM proteins encoded in theN. punctiformegenome and the fact that this study only associates a fraction of them with biological functions, it seems likely that CrtB may play an important role in other biological processes in cyanobacteria.IMPORTANCEIn gram-negative bacteria, exosortases facilitate the trafficking of proteins to the exterior of the cell where they have been implicated in stabilizing the association of extracellular polymeric substances (EPS) with the cell surface to facilitate biofilm formation and flocculation, but the role of exosortases in cyanobacteria has not been explored. Here, we characterize the role of cyanoexosortase B (CrtB) in the filamentous cyanobacteriumNostoc punctiforme, demonstrating thatcrtBis essential for motility, biofilm formation, and the production of the sunscreen pigment scytonemin. These findings have important implications for understanding motility and biofilm formation in filamentous cyanobacteria as well as efforts toward the heterologous production of scytonemin in non-native hosts. 

Abstract Simulating present‐day solid Earth deformation and volatile cycling requires integrating diverse geophysical data sets and advanced numerical techniques to model complex multiphysics processes at high resolutions. Subduction zone modeling is particularly challenging due to the large geographic extent, localized deformation zones, and the strong feedbacks between reactive fluid transport and solid deformation. Here, we develop new workflows for simulating 3‐dimensional thermal‐mechanical subduction and patterns of volatile dehydration at convergent margins, adaptable to include reactive fluid transport. We apply these workflows to the Hikurangi margin, where recent geophysical investigations have offered unprecedented insight into the structure and processes coupling fluid transport and solid deformation across broad spatiotemporal scales. Geophysical data sets constraining the downgoing and overriding plate structure are collated with the Geodynamic World Builder, which provides the initial conditions for forward simulations using the open‐source geodynamic modeling software code ASPECT. We systematically examine how plate interface rheology and hydration of the downgoing plate and upper mantle influence Pacific–Australian convergence and seismic anisotropy. Models prescribing a plate boundary viscosity of Pa s best reproduce observed plate velocities, and changing the configuration of the Pacific–Australia plate boundary directly influences the modeled plate motions. Models considering hydrated olivine fabrics best reproduce observations of seismic anisotropy. Predicted patterns of slab dehydration and mantle melting correlate well with observations of seismic attenuation and arc volcanism. These results suggest that hydration‐related rheological heterogeneity and related fluid weakening may strongly influence slab dynamics. Future investigations integrating coupled fluid transport and global mantle flow will provide insight into the feedbacks between subduction dynamics, fluid pathways, and arc volcanism. 

Abstract It has been suggested that the Atlantic meridional overturning circulation (AMOC) in many CMIP6 models is overly sensitive to anthropogenic aerosol forcing, and it has been proposed that this is due to the inclusion of aerosol indirect effects for the first time in many CMIP6 models. We analyze the AMOC response in a newly released ensemble of simulations performed with CESM2 forced by the CMIP5 input data sets (CESM2‐CMIP5). This AMOC response is then compared to the CMIP5‐generation CESM1 large ensemble (CESM1‐LE) and the CMIP6‐generation CESM2 large ensemble (CESM2‐LE). A key conclusion, only made possible by this experimental setup, is that changes in aerosol‐indirect effects cannot explain differences in AMOC response between CESM1‐LE and CESM2‐LE. Instead, we hypothesize that the difference is due to increased interannual variability of anthropogenic emissions. This forcing variability may act through a nonlinear relationship between the surface heat budget of the North Atlantic and the AMOC. 

Abstract DNA methylation at cytosine bases (5-methylcytosine, 5mC) is a heritable epigenetic mark regulating gene expression. While enzymes that metabolize 5mC are well-characterized, endogenous signaling molecules that regulate DNA methylation machinery have not been described. We report that physiological nitric oxide (NO) concentrations reversibly inhibit the DNA demethylases TET and ALKBH2 by binding to the mononuclear non-heme iron atom forming a dinitrosyliron complex (DNIC) and preventing cosubstrates from binding. In cancer cells treated with exogenous NO, or endogenously synthesizing NO, 5mC and 5-hydroxymethylcytosine (5hmC) increase, with no changes in DNA methyltransferase activity. 5mC is also significantly increased in NO-producing patient-derived xenograft tumors from mice. Genome-wide methylome analysis of cells chronically treated with NO (10 days) shows enrichment of 5mC and 5hmC at gene-regulatory loci, correlating with altered expression of NO-regulated tumor-associated genes. Regulation of DNA methylation is distinctly different from canonical NO signaling and represents a unique epigenetic role for NO. 

Background The increased interest in why and how trees die from fire has led to several syntheses of the potential mechanisms of fire-induced tree mortality. However, these generally neglect to consider experimental methods used to simulate fire behaviour conditions. Aims To describe, evaluate the appropriateness of and provide a historical timeline of the different approaches that have been used to simulate fire behaviour in fire-induced tree mortality studies. Methods We conducted a historical review of the different actual and fire proxy methods that have been used to further our understanding of fire-induced tree mortality. Key results Most studies that assess the mechanisms of fire-induced tree mortality in laboratory settings make use of fire proxies instead of real fires and use cut branches instead of live plants. Implications Further research should assess mechanisms of fire-induced tree mortality using live plants in paired combustion laboratory and landscape fire experiments. 

Abstract This paper reviews an emerging experimental literature that uses laboratory methods to both identify causes of the 2007–2009 financial crisis, and to assess the effectiveness of policies implemented in response. Papers reviewed include experiments conducted to evaluate central bank and Treasury responses to the crisis, experiments that study the consequences of interconnectedness between financial firms on financial system stability, and experiments conducted to evaluate policies intended to more effectively regulate specific types of financial institutions. Laboratory methods are ideally suited to investigating the consequences of untested policies in new environmental circumstances – just the situation provoked by the crisis. The continually evolving structure of the financial system suggests an expanded future role for laboratory methods in this area. 

Abstract BackgroundModern computational modeling could provide the key to obtaining new insights into the mechanisms of maize stalk failure as well as suggesting new ways to improve stalk strength. However, a complete set of mechanical properties of maize tissues is required to enable computational modeling of maize stems. This study developed two compression test methods for obtaining the longitudinal modulus of elasticity of both rind and pith tissues, assessed the influence of water content on tissue properties, and investigated the relationship between rind modulus and pith modulus. These methods involved uniform 5–7 cm segments of maize stems which were scanned using a flatbed scanner then tested in compression using a universal testing machine in both intact and dissected (rind-only and pith-only) states. ResultsThe modulus of elasticity of pith tissues was highest for fully turgid specimens and decreased as water was removed from the specimens. Water content was negatively correlated with the modulus of elasticity of the rind. Rind and pith tissues were found to be weakly correlated. The median ratio of rind modulus to pith modulus was found to be 17. Of the two methods investigated, the pith-only specimen preparation was found to be simple reliable while the rind-only method was found to be adversely affected by lateral bowing of the specimen. ConclusionsResearchers can use the information in this paper to improve computational models of maize stems in three ways: (1) by incorporating realistic values of the longitudinal modulus of elasticity of pith and rind tissues; (2) by selecting pith and rind properties that match empirically observed ratios; and (3) by incorporating appropriate dependencies between these material properties and water content. From an experimental perspective, the intact/pith-only experimental method outlined in this paper is simpler than previously reported methods and provides reliable estimates of both pith and rind modulus of elasticity values. Further research using this measurement method is recommended to more clearly understand the influence of water content and turgor pressure on tissue properties. 

Abstract Maize stalk lodging is the structural failure of the stalk prior to harvest and is a major problem for maize (corn) producers and plant breeders. To address this problem, it is critical to understand precisely how geometric and material parameters of the maize stalk influence stalk strength. Computational models could be a powerful tool in such investigations, but current methods of creating computational models are costly, time-consuming and, most importantly, do not provide parameterized control of the maize stalk parameters. The purpose of this study was to develop and validate a parameterized 3D model of the maize stalk. The parameterized model provides independent control over all aspects of the maize stalk geometry and material properties. The model accurately captures the shape of actual maize stalks and is predictive of maize stalk stiffness and strength. The model was validated using stochastic sampling of material properties to account for uncertainty in the values and influence of mechanical tissue properties. Results indicated that buckling is influenced by material properties to a greater extent that flexural stiffness. Finally, we demonstrate that this model can be used to create an unlimited number of synthetic stalks from within the parameter space. This model will enable the future implementation of parameter sweep studies, sensitivity analysis and optimization studies, and can be used to create computational models of maize stalks with any desired combination of geometric and material properties. 

Context: Stalk lodging causes up to 43 % of yield losses in maize (Zea mays L.) worldwide, significantly worsening food and feed shortages. Stalk lodging resistance is a complex trait specified by several structural, material, and geometric phenotypes. However, the identity, relative contribution, and genetic tractability of these intermediate phenotypes remain unknown. Objective: The study is designed to identify and evaluate plant-, organ-, and tissue-level intermediate phenotypes associated with stalk lodging resistance following standardized phenotyping protocols and to understand the variation and genetic tractability of these intermediate phenotypes. Methods: We examined 16 diverse maize hybrids in two environments to identify and evaluate intermediate phenotypes associated with stalk flexural stiffness, a reliable indicator of stalk lodging resistance, at physiological maturity. Engineering-informed and machine learning models were employed to understand relationships among intermediate phenotypes and stalk flexural stiffness. Results: Stalk flexural stiffness showed significant genetic variation and high heritability (0.64) in the evaluated hybrids. Significant genetic variation and comparable heritability for the cross-sectional moment of inertia and Young’s modulus indicated that geometric and material properties are under tight genetic control and play a combinatorial role in determining stalk lodging resistance. Among the twelve internode-level traits measured on the bottom and the ear internode, most traits exhibited significant genetic variation among hybrids, moderate to high heritability, and considerable effect of genotype × environment interaction. The marginal statistical model based on structural engineering beam theory revealed that 74–80 % of the phenotypic variation for flexural stiffness was explained by accounting for the major diameter, minor diameter, and rind thickness of the stalks. The machine learning model explained a relatively modest proportion (58–62 %) of the variation for flexural stiffness.